IL_6LSS_125

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6LSS|1|2|A|4518, 6LSS|1|2|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_125 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.1322

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6LSS|1|2|C|4458
6LSS|1|2|U|4459
*
6LSS|1|2|A|4517
6LSS|1|2|A|4518
6LSS|1|2|C|4519
6LSS|1|2|G|4520

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L13a

Chain e

60S ribosomal protein L23