IL_6LSS_138

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6LSS|1|2|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_138 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.136

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6LSS|1|2|G|4680
6LSS|1|2|A|4681
6LSS|1|2|U|4682
6LSS|1|2|U|4683
6LSS|1|2|A|4684
6LSS|1|2|U|4685
*
6LSS|1|2|A|4705
6LSS|1|2|G|4706
6LSS|1|2|A|4707
6LSS|1|2|A|4708
6LSS|1|2|U|4709
6LSS|1|2|C|4710

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain V

60S ribosomal protein L13a

Chain z

Protein LLP homolog