IL_6LSS_155
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSS_155 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.183
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6LSS|1|5|G|21
6LSS|1|5|A|22
6LSS|1|5|A|23
6LSS|1|5|C|24
6LSS|1|5|G|25
6LSS|1|5|C|26
6LSS|1|5|G|27
*
6LSS|1|5|C|52
6LSS|1|5|U|53
6LSS|1|5|A|54
6LSS|1|5|A|55
6LSS|1|5|G|56
6LSS|1|5|C|57
Current chains
- Chain 5
- 5S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L11
- Chain r
- 60S ribosomal protein L5
Coloring options: