IL_6LSS_173

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_173 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.171

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6LSS|1|2|G|2847
6LSS|1|2|G|2848
6LSS|1|2|A|2849
6LSS|1|2|A|2850
6LSS|1|2|G|2851
6LSS|1|2|U|2852
6LSS|1|2|C|2853
6LSS|1|2|G|2854
6LSS|1|2|G|2855
*
6LSS|1|2|C|3837
6LSS|1|2|U|3838
6LSS|1|2|G|3839
6LSS|1|2|U|3840
6LSS|1|2|C|3841

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 9

Zinc finger protein 593

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L23