IL_6LT7_002

3D structure

PDB id

6LT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of human RPP20-RPP25 proteins in complex with the P3 domain of lncRNA RMRP

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

6LT7|1|F|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LT7_002 not in the Motif Atlas

Geometric match to IL_6LT7_001

Geometric discrepancy: 0.0416

The information below is about IL_6LT7_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6LT7|1|F|A|41
6LT7|1|F|C|42
*
6LT7|1|F|G|46
6LT7|1|F|U|47
6LT7|1|F|U|48

Current chains

Chain F

50-mer RNA

Nearby chains

Chain E

Ribonuclease P protein subunit p25