IL_6LU8_042

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

6LU8|1|2|C|1202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_042 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3079

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6LU8|1|2|C|1093
6LU8|1|2|G|1094
6LU8|1|2|A|1095
6LU8|1|2|C|1096
*
6LU8|1|2|G|1199
6LU8|1|2|G|1200
6LU8|1|2|U|1201
6LU8|1|2|C|1202
6LU8|1|2|G|1203

Current chains

Chain 2

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L18a

Chain c

60S ribosomal protein L21