IL_6LU8_058

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUCC*G(7MG)UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_058 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.3919

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6LU8|1|2|G|1586
6LU8|1|2|G|1587
6LU8|1|2|U|1588
6LU8|1|2|C|1589
6LU8|1|2|C|1590
*
6LU8|1|2|G|1604
6LU8|1|2|7MG|1605
6LU8|1|2|U|1606
6LU8|1|2|C|1607

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 9

Zinc finger protein 593

Chain B

60S ribosomal protein L3

Chain M

60S ribosomal protein L37