IL_6LU8_059

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6LU8|1|2|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_059 not in the Motif Atlas

Geometric match to IL_7A0S_075

Geometric discrepancy: 0.235

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6LU8|1|2|C|1590
6LU8|1|2|U|1591
6LU8|1|2|G|1592
*
6LU8|1|2|C|1603
6LU8|1|2|G|1604

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain 9

Zinc finger protein 593

Chain B

60S ribosomal protein L3

Chain M

60S ribosomal protein L37