IL_6LU8_063

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

6LU8|1|2|A|1699, 6LU8|1|2|C|1707, 6LU8|1|2|G|1708, 6LU8|1|2|C|1714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LU8|1|2|C|1694
6LU8|1|2|U|1695
6LU8|1|2|C|1696
6LU8|1|2|G|1697
6LU8|1|2|C|1698
6LU8|1|2|A|1699
6LU8|1|2|G|1700
6LU8|1|2|A|1701
6LU8|1|2|C|1702
6LU8|1|2|C|1703
6LU8|1|2|C|1704
6LU8|1|2|G|1705
6LU8|1|2|A|1706
6LU8|1|2|C|1707
6LU8|1|2|G|1708
6LU8|1|2|C|1709
6LU8|1|2|C|1714
6LU8|1|2|C|1715
6LU8|1|2|G|1716
6LU8|1|2|C|1717
6LU8|1|2|C|1718
6LU8|1|2|A|1719
6LU8|1|2|C|1720
6LU8|1|2|G|1721
*
6LU8|1|2|C|1841
6LU8|1|2|G|1842

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain p

60S ribosomal protein L7