IL_6LU8_113

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6LU8|1|2|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_113 not in the Motif Atlas

Geometric match to IL_4WF9_078

Geometric discrepancy: 0.3065

The information below is about IL_4WF9_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6LU8|1|2|G|3900
6LU8|1|2|A|3901
*
6LU8|1|2|U|4558
6LU8|1|2|A|4559
6LU8|1|2|C|4560
6LU8|1|2|C|4561

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Y

60S ribosomal protein L17