IL_6LU8_144

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

6LU8|1|2|C|4757, 6LU8|1|2|U|4758, 6LU8|1|2|A|4764, 6LU8|1|2|C|4871, 6LU8|1|2|G|4873, 6LU8|1|2|A|4874, 6LU8|1|2|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LU8|1|2|C|4756
6LU8|1|2|C|4757
6LU8|1|2|U|4758
6LU8|1|2|C|4759
6LU8|1|2|G|4760
6LU8|1|2|G|4761
6LU8|1|2|A|4762
6LU8|1|2|U|4763
6LU8|1|2|A|4764
6LU8|1|2|G|4765
*
6LU8|1|2|U|4869
6LU8|1|2|OMG|4870
6LU8|1|2|C|4871
6LU8|1|2|2MG|4872
6LU8|1|2|G|4873
6LU8|1|2|A|4874
6LU8|1|2|G|4875
6LU8|1|2|U|4876
6LU8|1|2|G|4877

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain b

60S ribosomal protein L18a

Chain o

60S ribosomal protein L6