IL_6LU8_181

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

6LU8|1|2|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_181 not in the Motif Atlas

Geometric match to IL_7A0S_064

Geometric discrepancy: 0.3689

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6LU8|1|2|G|4291
6LU8|1|2|A|4292
6LU8|1|2|PSU|4293
*
6LU8|1|2|A|4317
6LU8|1|2|C|4318

Current chains

Chain 2

28S rRNA

Nearby chains

Chain W

60S ribosomal protein L36a