IL_6MKN_048

3D structure

PDB id

6MKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MKN_048 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2152

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6MKN|1|A|C|1259
6MKN|1|A|C|1260
6MKN|1|A|A|1261
6MKN|1|A|C|1262
*
6MKN|1|A|G|1273
6MKN|1|A|G|1274
6MKN|1|A|A|1275
6MKN|1|A|G|1276

Current chains

Chain A

16S rRNA

Nearby chains

Chain V

30S ribosomal protein Thx