IL_6MPF_040

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6MPF|1|A|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MPF_040 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1195

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6MPF|1|A|G|1030
6MPF|1|A|U|1031
6MPF|1|A|G|1032
*
6MPF|1|A|C|1189
6MPF|1|A|C|1190

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z