IL_6MPF_041
3D structure
- PDB id
- 6MPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6MPF|1|A|C|1036
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MPF_041 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.124
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6MPF|1|A|U|1034
6MPF|1|A|G|1035
6MPF|1|A|C|1036
6MPF|1|A|A|1037
6MPF|1|A|U|1038
*
6MPF|1|A|A|1185
6MPF|1|A|U|1186
6MPF|1|A|G|1187
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
- Chain X
- tRNA ASL Escherichia coli Arg1
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