IL_6MPF_065

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

AGUUGC*GGCACUCU

Length

14 nucleotides

Bulged bases

6MPF|1|A|U|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MPF|1|A|A|1105
6MPF|1|A|G|1106
6MPF|1|A|U|1107
6MPF|1|A|U|1108
6MPF|1|A|G|1109
6MPF|1|A|C|1110
*
6MPF|1|A|G|1125
6MPF|1|A|G|1126
6MPF|1|A|C|1127
6MPF|1|A|A|1128
6MPF|1|A|C|1129
6MPF|1|A|U|1130
6MPF|1|A|C|1131
6MPF|1|A|U|1132

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10