IL_6MTB_029

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

6MTB|1|5|C|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_029 not in the Motif Atlas

Geometric match to IL_3SNP_003

Geometric discrepancy: 0.3505

The information below is about IL_3SNP_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6MTB|1|5|G|497
6MTB|1|5|C|498
6MTB|1|5|G|499
*
6MTB|1|5|C|656
6MTB|1|5|C|657

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4