IL_6MTB_118

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*ACGCG

Length

18 nucleotides

Bulged bases

6MTB|1|5|C|3791, 6MTB|1|5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTB|1|5|C|3781
6MTB|1|5|5MC|3782
6MTB|1|5|A|3783
6MTB|1|5|A|3784
6MTB|1|5|A2M|3785
6MTB|1|5|U|3786
6MTB|1|5|G|3787
6MTB|1|5|C|3788
6MTB|1|5|C|3789
6MTB|1|5|U|3790
6MTB|1|5|C|3791
6MTB|1|5|OMG|3792
6MTB|1|5|U|3793
*
6MTB|1|5|A|3807
6MTB|1|5|C|3808
6MTB|1|5|G|3809
6MTB|1|5|C|3810
6MTB|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60S ribosomal protein L41