IL_6MTB_188

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTB|1|9|U|115
6MTB|1|9|OMU|116
6MTB|1|9|C|117
6MTB|1|9|C|118
6MTB|1|9|PSU|119
6MTB|1|9|U|120
6MTB|1|9|OMU|121
6MTB|1|9|G|122
*
6MTB|1|9|C|342
6MTB|1|9|A|343
6MTB|1|9|U|344
6MTB|1|9|U|345
6MTB|1|9|C|346
6MTB|1|9|G|347
6MTB|1|9|A|348

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain II

40S ribosomal protein S8