IL_6MTB_241

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_241 not in the Motif Atlas

Geometric match to IL_6IA2_004

Geometric discrepancy: 0.1177

The information below is about IL_6IA2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTB|1|9|G|1270
6MTB|1|9|C|1271
6MTB|1|9|C|1272
*
6MTB|1|9|G|1510
6MTB|1|9|U|1511
6MTB|1|9|C|1512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

40S ribosomal protein S10

Chain PP

40S ribosomal protein S15

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a