IL_6MTB_274

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

6MTB|1|5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_274 not in the Motif Atlas

Geometric match to IL_8C3A_130

Geometric discrepancy: 0.1458

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6MTB|1|5|G|448
6MTB|1|5|C|449
6MTB|1|5|G|450
6MTB|1|5|C|451
*
6MTB|1|5|G|1296
6MTB|1|5|U|1297
6MTB|1|5|C|1298

Current chains

Chain 5

28S rRNA

Nearby chains

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L35a