IL_6MTC_047
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- G(P4U)G*CAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTC_047 not in the Motif Atlas
- Homologous match to IL_8P9A_249
- Geometric discrepancy: 0.2715
- The information below is about IL_8P9A_249
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6MTC|1|5|G|1347
6MTC|1|5|P4U|1348
6MTC|1|5|G|1349
*
6MTC|1|5|C|1507
6MTC|1|5|A|1508
6MTC|1|5|C|1509
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain N
- 60S Ribosomal protein L15
- Chain Q
- 60S ribosomal protein L18
- Chain a
- 60S ribosomal protein L27a
Coloring options: