3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GACC*GC
Length
6 nucleotides
Bulged bases
6MTC|1|5|C|4349
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTC_134 not in the Motif Atlas
Geometric match to IL_7RQB_058
Geometric discrepancy: 0.2966
The information below is about IL_7RQB_058
Detailed Annotation
Single stack bend
Broad Annotation
Single stack bend
Motif group
IL_76488.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
36

Unit IDs

6MTC|1|5|G|4347
6MTC|1|5|A|4348
6MTC|1|5|C|4349
6MTC|1|5|C|4350
*
6MTC|1|5|G|4364
6MTC|1|5|C|4365

Current chains

Chain 5
28S rRNA

Nearby chains

Chain L
60S ribosomal protein L13
Chain Q
60S ribosomal protein L18
Chain a
60S ribosomal protein L27a
Chain o
60S ribosomal protein L36a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1091 s