IL_6MTC_147

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6MTC|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_147 not in the Motif Atlas

Geometric match to IL_7A0S_081

Geometric discrepancy: 0.3254

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6MTC|1|5|C|4582
6MTC|1|5|C|4583
6MTC|1|5|A|4584
6MTC|1|5|U|4585
*
6MTC|1|5|A|4717
6MTC|1|5|G|4718
6MTC|1|5|G|4719
6MTC|1|5|C|4720
6MTC|1|5|G|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L13a