IL_6MTC_214

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_214 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1299

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTC|1|9|G|692
6MTC|1|9|A|693
6MTC|1|9|G|694
*
6MTC|1|9|U|732
6MTC|1|9|C|733
6MTC|1|9|C|734

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

40S ribosomal protein S7

Chain WW

40S ribosomal protein S15a