3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AGGUUC*GUU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTC_228 not in the Motif Atlas
Homologous match to IL_4V88_435
Geometric discrepancy: 0.1351
The information below is about IL_4V88_435
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_22046.1
Basepair signature
cWW-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6MTC|1|9|A|1042
6MTC|1|9|G|1043
6MTC|1|9|G|1044
6MTC|1|9|U|1045
6MTC|1|9|U|1046
6MTC|1|9|C|1047
*
6MTC|1|9|G|1071
6MTC|1|9|U|1072
6MTC|1|9|U|1073

Current chains

Chain 9
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain A
60S ribosomal protein L8
Chain OO
40S ribosomal protein S14
Chain aa
40S ribosomal protein S26

Coloring options:


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