IL_6MTC_228
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTC_228 not in the Motif Atlas
- Homologous match to IL_4V88_435
- Geometric discrepancy: 0.1351
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6MTC|1|9|A|1042
6MTC|1|9|G|1043
6MTC|1|9|G|1044
6MTC|1|9|U|1045
6MTC|1|9|U|1046
6MTC|1|9|C|1047
*
6MTC|1|9|G|1071
6MTC|1|9|U|1072
6MTC|1|9|U|1073
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- 60S ribosomal protein L8
- Chain OO
- 40S ribosomal protein S14
- Chain aa
- 40S ribosomal protein S26
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