IL_6MTC_240

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_240 not in the Motif Atlas

Geometric match to IL_4E48_005

Geometric discrepancy: 0.109

The information below is about IL_4E48_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6MTC|1|9|G|1270
6MTC|1|9|C|1271
6MTC|1|9|C|1272
*
6MTC|1|9|G|1510
6MTC|1|9|U|1511
6MTC|1|9|C|1512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

40S ribosomal protein S10

Chain PP

40S ribosomal protein S15

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a