IL_6MTC_245

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6MTC|1|9|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_245 not in the Motif Atlas

Homologous match to IL_4V88_450

Geometric discrepancy: 0.1633

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

6MTC|1|9|U|1329
6MTC|1|9|G|1330
6MTC|1|9|C|1331
6MTC|1|9|A|1332
6MTC|1|9|U|1333
*
6MTC|1|9|A|1498
6MTC|1|9|U|1499
6MTC|1|9|G|1500

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

40S ribosomal protein S3

Chain KK

40S ribosomal protein S10

Chain UU

40S ribosomal protein S20

Chain dd

40S ribosomal protein S29