IL_6MTC_252

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

6MTC|1|9|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_252 not in the Motif Atlas

Geometric match to IL_2IZN_001

Geometric discrepancy: 0.3335

The information below is about IL_2IZN_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6MTC|1|9|C|1412
6MTC|1|9|G|1413
*
6MTC|1|9|C|1427
6MTC|1|9|G|1428
6MTC|1|9|G|1429

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

40S ribosomal protein S16

Chain TT

40S ribosomal protein S19