3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGAAGUCGG*CUGUC
Length
14 nucleotides
Bulged bases
6MTC|1|5|G|3839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTC_284 not in the Motif Atlas
Homologous match to IL_8C3A_484
Geometric discrepancy: 0.0885
The information below is about IL_8C3A_484
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.2
Basepair signature
cWW-cWW-L-cWW-L-R-L-R-L-L
Number of instances in this motif group
3

Unit IDs

6MTC|1|5|G|2847
6MTC|1|5|G|2848
6MTC|1|5|A|2849
6MTC|1|5|A|2850
6MTC|1|5|G|2851
6MTC|1|5|U|2852
6MTC|1|5|C|2853
6MTC|1|5|G|2854
6MTC|1|5|G|2855
*
6MTC|1|5|C|3837
6MTC|1|5|U|3838
6MTC|1|5|G|3839
6MTC|1|5|U|3840
6MTC|1|5|C|3841

Current chains

Chain 5
28S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain V
60S ribosomal protein L23

Coloring options:


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