IL_6MTC_296

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_296 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2527

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29223.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6MTC|1|9|OMU|116
6MTC|1|9|C|117
6MTC|1|9|C|118
6MTC|1|9|PSU|119
6MTC|1|9|U|120
6MTC|1|9|OMU|121
*
6MTC|1|9|A|343
6MTC|1|9|U|344
6MTC|1|9|U|345
6MTC|1|9|C|346
6MTC|1|9|G|347

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain II

40S ribosomal protein S8