IL_6MTC_306

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

(4AC)G*CAG

Length

5 nucleotides

Bulged bases

6MTC|1|9|A|1489

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_306 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.177

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

6MTC|1|9|4AC|1337
6MTC|1|9|G|1338
*
6MTC|1|9|C|1488
6MTC|1|9|A|1489
6MTC|1|9|G|1490

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain DD

40S ribosomal protein S3

Chain QQ

40S ribosomal protein S16

Chain UU

40S ribosomal protein S20

Chain dd

40S ribosomal protein S29