IL_6MTD_024

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCG*CCG

Length

7 nucleotides

Bulged bases

6MTD|1|5|G|481, 6MTD|1|5|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_024 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2242

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6MTD|1|5|C|480
6MTD|1|5|G|481
6MTD|1|5|C|481|||A
6MTD|1|5|G|482
*
6MTD|1|5|C|672
6MTD|1|5|C|673
6MTD|1|5|G|674

Current chains

Chain 5

28S rRNA

Nearby chains

Chain r

el28