IL_6MTD_042

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6MTD|1|5|C|1214, 6MTD|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_042 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2946

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6MTD|1|5|C|1082
6MTD|1|5|U|1083
6MTD|1|5|C|1084
*
6MTD|1|5|G|1213
6MTD|1|5|C|1214
6MTD|1|5|C|1215
6MTD|1|5|C|1216
6MTD|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30

Chain b

eL29