IL_6MTD_047

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(P4U)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_047 not in the Motif Atlas

Homologous match to IL_8P9A_249

Geometric discrepancy: 0.2645

The information below is about IL_8P9A_249

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTD|1|5|G|1347
6MTD|1|5|P4U|1348
6MTD|1|5|G|1349
*
6MTD|1|5|C|1507
6MTD|1|5|A|1508
6MTD|1|5|C|1509

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain N

eL15

Chain Q

eL18

Chain a

uL15