IL_6MTD_051

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_051 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.1979

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6MTD|1|5|C|1431
6MTD|1|5|G|1432
6MTD|1|5|A|1433
6MTD|1|5|G|1434
*
6MTD|1|5|C|1450
6MTD|1|5|G|1451
6MTD|1|5|A|1452
6MTD|1|5|G|1453

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18

Chain b

eL29