IL_6MTD_054

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

6MTD|1|5|A|1650, 6MTD|1|5|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|1520
6MTD|1|5|C|1521
6MTD|1|5|OMG|1522
6MTD|1|5|A|1523
6MTD|1|5|A2M|1524
6MTD|1|5|A|1525
6MTD|1|5|G|1526
*
6MTD|1|5|C|1648
6MTD|1|5|U|1649
6MTD|1|5|A|1650
6MTD|1|5|G|1651
6MTD|1|5|U|1652
6MTD|1|5|A|1653
6MTD|1|5|G|1654
6MTD|1|5|C|1655
6MTD|1|5|U|1656
6MTD|1|5|G|1657

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain L

eL13

Chain N

eL15

Chain a

uL15

Chain j

eL37