IL_6MTD_069

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_069 not in the Motif Atlas

Geometric match to IL_4WF9_078

Geometric discrepancy: 0.2949

The information below is about IL_4WF9_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6MTD|1|5|G|1753
6MTD|1|5|U|1754
6MTD|1|5|C|1755
6MTD|1|5|U|1756
*
6MTD|1|5|A|1776
6MTD|1|5|C|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain J

uL5