IL_6MTD_077

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

6MTD|1|5|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_077 not in the Motif Atlas

Homologous match to IL_8GLP_078

Geometric discrepancy: 0.1067

The information below is about IL_8GLP_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

6MTD|1|5|C|1920
6MTD|1|5|C|1921
6MTD|1|5|G|1922
*
6MTD|1|5|C|2062
6MTD|1|5|G|2063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30

Chain M

eL14

Chain O

uL13

Chain S

eL20

Chain f

eL33