IL_6MTD_083

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6MTD|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_083 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1277

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6MTD|1|5|G|2001
6MTD|1|5|A|2002
6MTD|1|5|G|2003
6MTD|1|5|U|2004
6MTD|1|5|G|2005
*
6MTD|1|5|C|2014
6MTD|1|5|U|2015
6MTD|1|5|C|2016

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

uL10

Chain t

eL11