IL_6MTD_093

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(7MG)G*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_093 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1216

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTD|1|5|G|2521
6MTD|1|5|7MG|2522
6MTD|1|5|G|2523
*
6MTD|1|5|C|2532
6MTD|1|5|C|2533
6MTD|1|5|C|2534

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34

Chain k

eL38