IL_6MTD_094

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUGG*C(OMG)C

Length

9 nucleotides

Bulged bases

6MTD|1|5|G|2546

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_094 not in the Motif Atlas

Geometric match to IL_7RQB_041

Geometric discrepancy: 0.2709

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6MTD|1|5|G|2542
6MTD|1|5|A|2543
6MTD|1|5|G|2544
6MTD|1|5|U|2545
6MTD|1|5|G|2546
6MTD|1|5|G|2547
*
6MTD|1|5|C|2772
6MTD|1|5|OMG|2773
6MTD|1|5|C|2774

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

eL38