IL_6MTD_096

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUC*GG(B9B)AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_096 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.2067

The information below is about IL_8P9A_295

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6MTD|1|5|C|2589
6MTD|1|5|G|2590
6MTD|1|5|A|2591
6MTD|1|5|U|2592
6MTD|1|5|C|2593
*
6MTD|1|5|G|2752
6MTD|1|5|G|2753
6MTD|1|5|B9B|2754
6MTD|1|5|A|2755
6MTD|1|5|G|2756

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain Z

eL27

Chain g

eL34