IL_6MTD_121

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6MTD|1|5|A|3901, 6MTD|1|5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_121 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1006

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6MTD|1|5|G|3900
6MTD|1|5|A|3901
6MTD|1|5|A|3902
*
6MTD|1|5|U|4558
6MTD|1|5|A|4559
6MTD|1|5|C|4560
6MTD|1|5|C|4561

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22