IL_6MTD_122

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

6MTD|1|5|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_122 not in the Motif Atlas

Homologous match to IL_5TBW_093

Geometric discrepancy: 0.1256

The information below is about IL_5TBW_093

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6MTD|1|5|G|3913
6MTD|1|5|U|3914
6MTD|1|5|U|3915
*
6MTD|1|5|A|4388
6MTD|1|5|C|4389

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain a

uL15