IL_6MTD_126

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGAGAAG*CUCUGAUCG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|3948
6MTD|1|5|A|3949
6MTD|1|5|U|3950
6MTD|1|5|G|3951
6MTD|1|5|A|3952
6MTD|1|5|G|3953
6MTD|1|5|A|3954
6MTD|1|5|A|3955
6MTD|1|5|G|3956
*
6MTD|1|5|C|4057
6MTD|1|5|U|4058
6MTD|1|5|C|4059
6MTD|1|5|U|4060
6MTD|1|5|G|4061
6MTD|1|5|A|4062
6MTD|1|5|U|4063
6MTD|1|5|C|4064
6MTD|1|5|G|4065

Current chains

Chain 5

28S rRNA

Nearby chains

Chain i

eL36

Chain u

uL1