IL_6MTD_133

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

6MTD|1|5|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_133 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1732

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6MTD|1|5|G|4291
6MTD|1|5|A|4292
6MTD|1|5|PSU|4293
6MTD|1|5|C|4294
*
6MTD|1|5|G|4316
6MTD|1|5|A|4317
6MTD|1|5|C|4318

Current chains

Chain 5

28S rRNA

Nearby chains

Chain T

eL21

Chain b

eL29

Chain o

eL42