IL_6MTD_136

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGC(PSU)UGUG*UUUUUGA(PSU)CC

Length

18 nucleotides

Bulged bases

6MTD|1|5|U|4437

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|G|4400
6MTD|1|5|G|4401
6MTD|1|5|C|4402
6MTD|1|5|PSU|4403
6MTD|1|5|U|4404
6MTD|1|5|G|4405
6MTD|1|5|U|4406
6MTD|1|5|G|4407
*
6MTD|1|5|U|4435
6MTD|1|5|U|4436
6MTD|1|5|U|4437
6MTD|1|5|U|4438
6MTD|1|5|U|4439
6MTD|1|5|G|4440
6MTD|1|5|A|4441
6MTD|1|5|PSU|4442
6MTD|1|5|C|4443
6MTD|1|5|C|4444

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain I

uL16

Chain b

eL29