IL_6MTD_186

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_186 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1725

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6MTD|1|9|U|116
6MTD|1|9|C|117
6MTD|1|9|C|118
6MTD|1|9|U|119
6MTD|1|9|U|120
6MTD|1|9|U|121
*
6MTD|1|9|A|343
6MTD|1|9|U|344
6MTD|1|9|U|345
6MTD|1|9|C|346
6MTD|1|9|G|347

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8