IL_6MTD_191

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_191 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2204

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6MTD|1|9|C|188
6MTD|1|9|U|189
6MTD|1|9|G|190
6MTD|1|9|A|191
6MTD|1|9|C|192
*
6MTD|1|9|G|207
6MTD|1|9|G|208
6MTD|1|9|A|209
6MTD|1|9|U|210
6MTD|1|9|G|211

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

eS8